Tolstorukov, M. Y.: search on Z-Library

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1

Swi/Snf chromatin remodeling/tumor suppressor complex establishes nucleosome occupancy at target promoters

Tolstorukov, M. Y., Sansam, C. G., Lu, P., Koellhoffer, E. C., Helming, K. C., Alver, B. H., Tillman, E. J., Evans, J. A., Wilson, B. G., Park, P. J., Roberts, C. W. M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2013

Language:

english

File:

PDF, 902 KB

english, 2013

2

Genetic control of cell type and complex organization of the mating type locus in the yeastPichia pinus

I. I. Tolstorukov, S. V. Benevolensky, B. D. Efremov

Journal:

Current Genetics

Year:

1982

Language:

english

File:

PDF, 568 KB

english, 1982

3

A scalable low-cost cGMP process for clinical grade production of the HIV inhibitor 5P12-RANTES in Pichia pastoris

Cerini, Fabrice, Gaertner, Hubert, Madden, Knut, Tolstorukov, Ilya, Brown, Scott, Laukens, Bram, Callewaert, Nico, Harner, Jay C., Oommen, Anna M., Harms, John T., Sump, Anthony R., Sealock, Robert C.

Journal:

Protein Expression and Purification

Year:

2015

Language:

english

File:

PDF, 2.72 MB

english, 2015

4

Histone locus regulation by the Drosophila dosage compensation adaptor protein CLAMP

Rieder, Leila E., Koreski, Kaitlin P., Boltz, Kara A., Kuzu, Guray, Urban, Jennifer A., Bowman, Sarah K., Zeidman, Anna, Jordan, William T., Tolstorukov, Michael Y., Marzluff, William F., Duronio, Rob

Journal:

Genes & Development

Year:

2017

Language:

english

File:

PDF, 23.04 MB

english, 2017

5

“Antiparallel” DNA Loop in Gal Repressosome Visualized by Atomic Force Microscopy

Konstantin Virnik, Yuri L Lyubchenko, Mikhail A Karymov, Paul Dahlgren, Michael Y Tolstorukov, Szabolcs Semsey, Victor B Zhurkin, Sankar Adhya

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 1.63 MB

english, 2003

6

Comparative analysis of metazoan chromatin organization

Ho, Joshua W. K., Jung, Youngsook L., Liu, Tao, Alver, Burak H., Lee, Soohyun, Ikegami, Kohta, Sohn, Kyung-Ah, Minoda, Aki, Tolstorukov, Michael Y., Appert, Alex, Parker, Stephen C. J., Gu, Tingting,

Journal:

Year:

2014

Language:

english

File:

PDF, 2.35 MB

english, 2014

7

Genetic Control of Purine Biosynthesis in Yeast Pichia methanolica. The ADE5 (PUR4) Gene Controlling 5"-Phosphoribosylformyl Glycinamidine Synthetase

T. A. Dutova, M. G. Tarutina, E. M. Milgrom, N. N. Serkova, I. I. Tolstorukov

Journal:

Russian Journal of Genetics

Year:

2000

Language:

english

File:

PDF, 123 KB

english, 2000

8

Pilot study of a rapid and minimally instrumented sputum sample preparation method for molecular diagnosis of tuberculosis

Ferguson, Tanya M., Weigel, Kris M., Lakey Becker, Annie, Ontengco, Delia, Narita, Masahiro, Tolstorukov, Ilya, Doebler, Robert, Cangelosi, Gerard A., Niemz, Angelika

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 514 KB

english, 2016

9

Differential Occupancy of Two GA-Binding Proteins Promotes Targeting of the Drosophila Dosage Compensation Complex to the Male X Chromosome

Kaye, Emily G., Booker, Matthew, Kurland, Jesse V., Conicella, Alexander E., Fawzi, Nicolas L., Bulyk, Martha L., Tolstorukov, Michael Y., Larschan, Erica

Journal:

Year:

2018

Language:

english

File:

PDF, 8.86 MB

english, 2018

10

Isolation and properties of genetically defined strains of the methylotrophic yeastHansenula polymorphaCBS4732

Kantcho L. Lahtchev, Vika D. Semenova, Ilia I. Tolstorukov, Ida van der Klei, Marten Veenhuis

Journal:

Archives of Microbiology

Year:

2002

Language:

english

File:

PDF, 98 KB

english, 2002

11

Nature and function of insulator protein binding sites in the Drosophila genome

Schwartz, Y. B., Linder-Basso, D., Kharchenko, P. V., Tolstorukov, M. Y., Kim, M., Li, H.-B., Gorchakov, A. A., Minoda, A., Shanower, G., Alekseyenko, A. A., Riddle, N. C., Jung, Y. L., Gu, T., Plache

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 3.22 MB

english, 2012

12

Enrichment of HP1a on Drosophila Chromosome 4 Genes Creates an Alternate Chromatin Structure Critical for Regulation in this Heterochromatic Domain

Riddle, Nicole C., Jung, Youngsook L., Gu, Tingting, Alekseyenko, Artyom A., Asker, Dalal, Gui, Hongxing, Kharchenko, Peter V., Minoda, Aki, Plachetka, Annette, Schwartz, Yuri B., Tolstorukov, Michael

Journal:

Year:

2012

Language:

english

File:

PDF, 3.39 MB

english, 2012

13

Histone Variant H2A.Bbd Is Associated with Active Transcription and mRNA Processing in Human Cells

Tolstorukov, Michael Y., Goldman, Joseph A., Gilbert, Cristele, Ogryzko, Vasily, Kingston, Robert E., Park, Peter J.

Journal:

Year:

2012

Language:

english

File:

PDF, 359 KB

english, 2012

14

Alterations in chromatin at antigen receptor loci define lineage progression during B lymphopoiesis

Lion, Mattia, Muhire, Brejnev, Namiki, Yuka, Tolstorukov, Michael Y., Oettinger, Marjorie A.

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 2.09 MB

2020

15

Nucleosome positioning in human HOX gene clusters

Kharchenko, Pv, Woo, Cj, Tolstorukov, My

Journal:

Genome Research

Year:

2008

Language:

english

File:

PDF, 561 KB

english, 2008

16

Chromatin restriction by the nucleosome remodeler Mi-2β and functional interplay with lineage-specific transcription regulators control B-cell differentiation

Yoshida, Toshimi, Hu, Yeguang, Zhang, Zhihong, Emmanuel, Akinola O., Galani, Kiriaki, Muhire, Brejnev, Snippert, Hugo J., Williams, Christine J., Tolstorukov, Michael Y., Gounari, Fotini, Georgopoulos

Journal:

Genes & Development

Year:

2019

Language:

english

File:

PDF, 7.36 MB

english, 2019

17

Impact of sequencing depth in ChIP-seq experiments

Jung, Y. L., Luquette, L. J., Ho, J. W. K., Ferrari, F., Tolstorukov, M., Minoda, A., Issner, R., Epstein, C. B., Karpen, G. H., Kuroda, M. I., Park, P. J.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 8.62 MB

english, 2014

18

Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction

Mueller, Britta, Mieczkowski, Jakub, Kundu, Sharmistha, Wang, Peggy, Sadreyev, Ruslan, Tolstorukov, Michael Y., Kingston, Robert E.

Journal:

Genes & Development

Year:

2017

Language:

english

File:

PDF, 1.83 MB

english, 2017

19

Multiplicity of mechanisms of carbon catabolite repression involved in the synthesis of alcohol oxidase in the methylotrophic yeast Pichia pinus

A. A. Sibirny, V. I. Titorenko, B. D. Efremov, I. I. Tolstorukov

Journal:

Year:

1987

Language:

english

File:

PDF, 773 KB

english, 1987

20

Impact of chromatin structure on sequence variability in the human genome

Tolstorukov, Michael Y, Volfovsky, Natalia, Stephens, Robert M, Park, Peter J

Journal:

Nature Structural and Molecular Biology

Year:

2011

Language:

english

File:

PDF, 956 KB

english, 2011

21

Conformational Transitions of DNA Induced by Changing Water Content of the Sample: A Theoretical Study

Tolstorukov, Michael Ye., Maleev, Vladimir Ya.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2000

Language:

english

File:

PDF, 213 KB

english, 2000

22

Multiplexed Illumina sequencing libraries from picogram quantities of DNA

Sarah K Bowman, Matthew D Simon, Aimee M Deaton, Michael Tolstorukov…

Journal:

Year:

2013

Language:

english

File:

PDF, 223 KB

english, 2013

23

A mutant spacer sequence between -35 and -10 elements makes the Plac promoter hyperactive and cAMP receptor protein-independent

Liu, M., Tolstorukov, M., Zhurkin, V., Garges, S., Adhya, S.

Journal:

Proceedings of the National Academy of Sciences

Year:

2004

Language:

english

File:

PDF, 602 KB

english, 2004

24

The CLAMP protein links the MSL complex to the X chromosome during Drosophila dosage compensation

Soruco, M. M. L., Chery, J., Bishop, E. P., Siggers, T., Tolstorukov, M. Y., Leydon, A. R., Sugden, A. U., Goebel, K., Feng, J., Xia, P., Vedenko, A., Bulyk, M. L., Park, P. J., Larschan, E.

Journal:

Genes & Development

Year:

2013

Language:

english

File:

PDF, 3.18 MB

english, 2013

25

Regulated large-scale nucleosome density patterns and precise nucleosome positioning correlate with V(D)J recombination

Pulivarthy, Sandhya R., Lion, Mattia, Kuzu, Guray, Matthews, Adam G. W., Borowsky, Mark L., Morris, John, Kingston, Robert E., Dennis, Jonathan H., Tolstorukov, Michael Y., Oettinger, Marjorie A.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 3.25 MB

english, 2016

26

Formation of ARS-Independent Miniplasmids upon Transformation of Yeast Pichia methanolica with DNA Molecules Containing “Transforming” and “Nontransforming” Genes

M. G. Tarutina, I. I. Tolstorukov

Journal:

Russian Journal of Genetics

Year:

2002

Language:

english

File:

PDF, 87 KB

english, 2002

27

Protein–DNA Hydrophobic Recognition in the Minor Groove is Facilitated by Sugar Switching

Michael Y. Tolstorukov, Robert L. Jernigan, Victor B. Zhurkin

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 1.12 MB

english, 2004

28

A-tract clusters may facilitate DNA packaging in bacterial nucleoid

Tolstorukov, M. Y.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 2.25 MB

english, 2005

29

Non-neutral evolution of H3.3-encoding genes occurs without alterations in protein sequence

Muhire, Brejnev M., Booker, Matthew A., Tolstorukov, Michael Y.

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 2.59 MB

english, 2019

30

Mxr1p, a Key Regulator of the Methanol Utilization Pathway and Peroxisomal Genes in Pichia pastoris

Lin-Cereghino, G. P., Godfrey, L., de la Cruz, B. J., Johnson, S., Khuongsathiene, S., Tolstorukov, I., Yan, M., Lin-Cereghino, J., Veenhuis, M., Subramani, S., Cregg, J. M.

Journal:

Molecular and Cellular Biology

Year:

2006

Language:

english

File:

PDF, 605 KB

english, 2006

31

Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming

West, Jason A., Cook, April, Alver, Burak H., Stadtfeld, Matthias, Deaton, Aimee M., Hochedlinger, Konrad, Park, Peter J., Tolstorukov, Michael Y., Kingston, Robert E.

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 2.05 MB

english, 2014

32

Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin

Riddle, N. C., Minoda, A., Kharchenko, P. V., Alekseyenko, A. A., Schwartz, Y. B., Tolstorukov, M. Y., Gorchakov, A. A., Jaffe, J. D., Kennedy, C., Linder-Basso, D., Peach, S. E., Shanower, G., Zheng,

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 2.22 MB

english, 2011

33

The Long Noncoding RNAs NEAT1 and MALAT1 Bind Active Chromatin Sites

West, Jason A., Davis, Christopher P., Sunwoo, Hongjae, Simon, Matthew D., Sadreyev, Ruslan I., Wang, Peggy I., Tolstorukov, Michael Y., Kingston, Robert E.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.62 MB

english, 2014

34

Expression of Recombinant Genes in the Yeast Pichia pastoris

Cregg, James M., Tolstorukov, Ilya, Kusari, Anasua, Sunga, Anthony Jay, Madden, Knut, Chappell, Thomas

Journal:

Current Protocols Essential Laboratory Techniques

Year:

2018

Language:

english

File:

PDF, 421 KB

english, 2018

35

Mechanisms of Transformation in Yeast Pichia methanolica: Transforming and Nontransforming Genes

M. G. Tarutina, I. I. Tolstorukov

Journal:

Russian Journal of Genetics

Year:

2001

Language:

english

File:

PDF, 150 KB

english, 2001

36

Fatty acid desaturation in methylotrophic yeast Hansenula polymorpha strain CBS 1976 and unsaturated fatty acid auxotrophic mutants

Sarintip Anamnart, Ilya Tolstorukov, Yoshinobu Kaneko, Satoshi Harashima

Journal:

Journal of Fermentation and Bioengineering

Year:

1998

Language:

english

File:

PDF, 947 KB

english, 1998

37

The Molecular Evolution of Nucleosome Positioning Through Sequence-Dependent Deformation of the DNA Polymer

Babbitt, G. A., Tolstorukov, M. Y., Kim, Y.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2010

Language:

english

File:

PDF, 682 KB

english, 2010

38

ProtNA-ASA: Protein-nucleic acid structural database with information on accessible surface area

M. Y. Tkachenko, O. P. Boryskina, A. V. Shestopalova, M. Y. Tolstorukov

Journal:

International Journal of Quantum Chemistry

Year:

2010

Language:

english

File:

PDF, 61 KB

english, 2010

39

Nucleosome positioning in human HOX gene clusters

Kharchenko, P. V., Woo, C. J., Tolstorukov, M. Y., Kingston, R. E., Park, P. J.

Journal:

Genome Research

Year:

2008

Language:

english

File:

PDF, 613 KB

english, 2008

40

Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes

Tolstorukov, M. Y., Kharchenko, P. V., Goldman, J. A., Kingston, R. E., Park, P. J.

Journal:

Genome Research

Year:

2009

Language:

english

File:

PDF, 1.17 MB

english, 2009

41

Cloning, sequencing, and functional analysis ofH-OLE1gene encoding Δ9-fatty acid desaturase inHansenula polymorpha

S.-F. Lu, I. I. Tolstorukov, S. Anamnart, Y. Kaneko, S. Harashima

Journal:

Applied Microbiology and Biotechnology

Year:

2000

Language:

english

File:

PDF, 522 KB

english, 2000

42

A Novel Roll-and-Slide Mechanism of DNA Folding in Chromatin: Implications for Nucleosome Positioning

Michael Y. Tolstorukov, Andrew V. Colasanti, David M. McCandlish, Wilma K. Olson, Victor B. Zhurkin

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.68 MB

english, 2007

43

Sequence-Specific Targeting of Dosage Compensation in Drosophila Favors an Active Chromatin Context

Alekseyenko, Artyom A., Ho, Joshua W. K., Peng, Shouyong, Gelbart, Marnie, Tolstorukov, Michael Y., Plachetka, Annette, Kharchenko, Peter V., Jung, Youngsook L., Gorchakov, Andrey A., Larschan, Erica,

Journal:

Year:

2012

Language:

english

File:

PDF, 1.73 MB

english, 2012

44

46. PAN-CANCER ANALYSIS OF ORTHOTOPIC PATIENT DERIVED XENOGRAFTS FROM BRAIN METASTASES

Zeng, Yu, Pelton, Kristine, Yerrum, Smitha, Kao, Pei-Lun, Sinai, Claire, Tran, Tony, Sinha, Rileen, Shetty, Aniket, Tolstorukov, Michael Y, Jaber, Aliya, Freitas, Dylan E, Pisano, William, Verselis, S

Journal:

Neuro-Oncology Advances

Year:

2020

File:

PDF, 88 KB

2020

45

Loss of the tumor suppressor Snf5 leads to aberrant activation of the Hedgehog-Gli pathway

Jagani, Zainab, Mora-Blanco, E Lorena, Sansam, Courtney G, McKenna, Elizabeth S, Wilson, Boris, Chen, Dongshu, Klekota, Justin, Tamayo, Pablo, Nguyen, Phuong T L, Tolstorukov, Michael

Journal:

Nature Medicine

Year:

2010

Language:

english

File:

PDF, 649 KB

english, 2010

46

Resolving Heart Regeneration by Replacement Histone Profiling

Goldman, Joseph Aaron, Kuzu, Guray, Lee, Nutishia, Karasik, Jaclyn, Gemberling, Matthew, Foglia, Matthew J., Karra, Ravi, Dickson, Amy L., Sun, Fei, Tolstorukov, Michael Y., Poss, Kenneth D.

Journal:

Developmental Cell

Year:

2017

Language:

english

File:

PDF, 4.87 MB

english, 2017

47

Mutants of the methylotrophic yeast Pichia pinus defective in C2 metabolism

I. I. Tolstorukov, B. D. Efremov, S. V. Benevolensky, V. I. Titorenko, A. A. Sibirny

Journal:

Year:

1989

Language:

english

File:

PDF, 584 KB

english, 1989

48

Design and analysis of ChIP-seq experiments for DNA-binding proteins

Kharchenko, Peter V, Tolstorukov, Michael Y, Park, Peter J

Journal:

Nature Biotechnology

Year:

2008

Language:

english

File:

PDF, 370 KB

english, 2008

49

CpG Islands Recruit a Histone H3 Lysine 36 Demethylase

Neil P. Blackledge, Jin C. Zhou, Michael Y. Tolstorukov, Anca M. Farcas, Peter J. Park, Robert J. Klose

Journal:

Year:

2010

Language:

english

File:

PDF, 1.52 MB

english, 2010

50

Sequence-Dependent B↔A Transition in DNA Evaluated with Dimeric and Trimeric Scales

Tolstorukov, M.Y., Ivanov, V.I., Malenkov, G.G., Jernigan, R.L., Zhurkin, V.B.

Journal:

Biophysical Journal

Year:

2001

Language:

english

File:

PDF, 429 KB

english, 2001

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